The Devonian period is broken into the Early, Middle and Late stages. By the start of the Early Devonian 419 mya, jawed fishes had divided into four distinct clades: the placoderms and spiny sharks, both of which are now extinct, and the cartilaginous and bony fishes, both of which are still extant. The modern bony fish, class Osteichthyes, appeared in the late Silurian or early Devonian, about 416 million years ago. Both the cartilaginous and bony fish may have arisen from either the placoderms or the spiny sharks. A subclass of bony fish, the ray-finned fishes (Actinopterygii), have become the dominant group in the post-Paleozoic and modern world, with some 30,000 living species. Meanwhile, another subclass of bony fish, the lobe-finned fishes, became the dominant group on land.
During the Late Devonian the first forests were taking shape on land. The first tetrapods appeared in the fossil record over a period, the beginning and end of which are marked with extinction events. This lasted until the end of the Devonian 359 mya. The ancestors of all tetrapods began adapting to walking on land, their strong pectoral and pelvic fins gradually evolved into legs (see Tiktaalik). In the oceans, primitive sharks became more numerous than in the Silurian and the late Ordovician. The first ammonite mollusks appeared. Trilobites, the mollusk-like brachiopods and the great coral reefs, were still common.
The group of lobe-finned fishes that were the ancestors of the tetrapod are grouped together as the Rhipidistia, and the first tetrapods evolved from these fish over the relatively short timespan 385–360 Ma. The early tetrapod groups themselves are grouped as Labyrinthodontia. They retained aquatic, fry-like tadpoles, a system still seen in modern amphibians. From the 1950s to the early 1980s it was thought that tetrapods evolved from fish that had already acquired the ability to crawl on land, possibly so they could go from a pool that was drying out to one that was deeper. However, in 1987, nearly complete fossils of Acanthostega from about 363 Ma showed that this Late Devonian transitional animal had legs and both lungs and gills, but could never have survived on land: its limbs and its wrist and ankle joints were too weak to bear its weight; its ribs were too short to prevent its lungs from being squeezed flat by its weight; its fish-like tail fin would have been damaged by dragging on the ground. The current hypothesis is that Acanthostega, which was about 1 metre (3.3 ft) long, was a wholly aquatic predator that hunted in shallow water. Its skeleton differed from that of most fish, in ways that enabled it to raise its head to breathe air while its body remained submerged, including: its jaws show modifications that would have enabled it to gulp air; the bones at the back of its skull are locked together, providing strong attachment points for muscles that raised its head; the head is not joined to the shoulder girdle and it has a distinct neck.
The Devonian proliferation of land plants may help to explain why air-breathing would have been an advantage: leaves falling into streams and rivers would have encouraged the growth of aquatic vegetation; this would have attracted grazing invertebrates and small fish that preyed on them; they would have been attractive prey but the environment was unsuitable for the big marine predatory fish; air-breathing would have been necessary because these waters would have been short of oxygen, since warm water holds less dissolved oxygen than cooler marine water and since the decomposition of vegetation would have used some of the oxygen.
There are three major hypotheses as to how tetrapods evolved their stubby fins (proto-limbs). The traditional explanation is the "shrinking waterhole hypothesis" or "desert hypothesis" posited by the American paleontologist Alfred Romer. He believed limbs and lungs may have evolved from the necessity of having to find new bodies of water as old waterholes dried up.
The second hypothesis is the "inter-tidal hypothesis" put forward in 2010 by a team of Polish paleontologists led by Grzegorz Niedźwiedzki. They argued that sarcopterygians may have first emerged unto land from intertidal zones rather than inland bodies of water. Their hypothesis is based on the discovery of the 395 million-year-old Zachełmie tracks in Zachełmie, Poland, the oldest ever discovered fossil evidence of tetrapods.
The third hypothesis, the "woodland hypothesis", was proposed by the American paleontologist Gregory J. Retallack in 2011. He argues that limbs may have developed in shallow bodies of water in woodlands as a means of navigating in environments filled with roots and vegetation. He based his conclusions on the evidence that transitional tetrapod fossils are consistently found in habitats that were formerly humid and wooded floodplains.
By the late Devonian, land plants had stabilized freshwater habitats, allowing the first wetland ecosystems to develop, with increasingly complex food webs that afforded new opportunities. Freshwater habitats were not the only places to find water filled with organic matter and choked with plants with dense vegetation near the water's edge. Swampy habitats like shallow wetlands, coastal lagoons and large brackish river deltas also existed at this time, and there is much to suggest that this is the kind of environment in which the tetrapods evolved. Early fossil tetrapods have been found in marine sediments, and because fossils of primitive tetrapods in general are found scattered all around the world, they must have spread by following the coastal lines — they could not have lived in freshwater only.
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