Colocalization Benchmark Source

<h2 id="examples">Examples</h2>
<p>Researchers can submit examples of custom images when the benchmark images were used to validate colocalization on them. Submitted images are then posted on the site of CBS together with description of their properties and the values of coefficients, such as <i><a href="/facts/Pearson_coefficient/Igf0xDPc">Pearson's correlation coefficient (Rr)</a></i>, <i>overlap coefficient (R)</i>, and others. The template for submitting information about custom images can be downloaded from CBS site.
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<h2 id="see-also">See also</h2>
<ul><li><a href="/facts/Colocalization/1bLQyr4o">Colocalization</a></li>
<li><a href="/facts/Fluorescence_microscopy/eMwIdrRR">Fluorescence microscopy</a></li>
<li><a href="/facts/Bioimage_informatics/jv4scGuK">Bioimage informatics</a></li>
<li><a href="/facts/Biological_database/cQyWM7bs">Biological database</a></li></ul>

<h2 id="external-links">External links</h2>
<ul><li><a href="http://www.colocalization-benchmark.com/">Colocalization Benchmark Source home page</a></li></ul>

<h2 id="references">References</h2>

<ol>
<li id="fn:1"><p>Bolte S & Cordelieres FP (2006). "A guided tour into subcellular colocalization analysis in light microscopy." J Microsc 224:213–232. <a href="http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2818.2006.01706.x/abstract" target="_blank">http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2818.2006.01706.x/abstract</a> <a href="#fnref:1" class="footnote-back-ref">↩</a></p></li>
<li id="fn:2"><p>Comeau JW et al. (2006). "A guide to accurate fluorescence microscopy colocalization measurements." Biophys J 91:4611– 4622. <a href="http://www.cell.com/biophysj/abstract/S0006-3495(06)72173-7" target="_blank">http://www.cell.com/biophysj/abstract/S0006-3495(06)72173-7</a> <a href="#fnref:2" class="footnote-back-ref">↩</a></p></li>
<li id="fn:3"><p>Zinchuk V & Grossenbacher-Zinchuk O (2009). "Recent advances in quantitative colocalization analysis: focus on neuroscience." Prog Histochem Cytochem 44:125-172. <a href="http://www.sciencedirect.com/science/article/pii/S0079633609000229" target="_blank">http://www.sciencedirect.com/science/article/pii/S0079633609000229</a> <a href="#fnref:3" class="footnote-back-ref">↩</a></p></li>
<li id="fn:4"><p>Manders E et al. (1993). "Measurement of colocalization of objects in dual-color confocal images." J Microsc Oxford 169:375–382. <a href="http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2818.1993.tb03313.x/abstract" target="_blank">http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2818.1993.tb03313.x/abstract</a> <a href="#fnref:4" class="footnote-back-ref">↩</a></p></li>
<li id="fn:5"><p>Wu Y et al. (2010). "Quantitative determination of spatial protein-protein correlations in fluorescence confocal microscopy." Biophys J 98:493-504. <a href="http://www.cell.com/biophysj/abstract/S0006-3495(09)01679-8" target="_blank">http://www.cell.com/biophysj/abstract/S0006-3495(09)01679-8</a> <a href="#fnref:5" class="footnote-back-ref">↩</a></p></li>
<li id="fn:6"><p>Zinchuk V et al. (2011). "Quantifying spatial correlations of fluorescent markers using enhanced background reduction with protein proximity index and correlation coefficient estimations." Nat Protoc 6:1554-1567. <a href="http://www.nature.com/nprot/journal/v6/n10/abs/nprot.2011.384.html" target="_blank">http://www.nature.com/nprot/journal/v6/n10/abs/nprot.2011.384.html</a> <a href="#fnref:6" class="footnote-back-ref">↩</a></p></li>
<li id="fn:7"><p>Zinchuk V & Grossenbacher-Zinchuk O (2011). "Quantitative colocalization analysis of confocal fluorescence microscopy images." Curr Protoc Cell Biol Unit 4.19. Archived 2009-11-28 at the Wayback Machine <a href="http://www.currentprotocols.com/protocol/cb0419" target="_blank">http://www.currentprotocols.com/protocol/cb0419</a> <a href="#fnref:7" class="footnote-back-ref">↩</a></p></li>
<li id="fn:8"><p>Zinchuk V et al. (2013). "Bridging the gap between qualitative and quantitative colocalization results in fluorescence microscopy studies." Sci Rep 3:1365 doi:10.1038/srep01365. <a href="http://www.nature.com/srep/2013/130304/srep01365/full/srep01365.html" target="_blank">http://www.nature.com/srep/2013/130304/srep01365/full/srep01365.html</a> <a href="#fnref:8" class="footnote-back-ref">↩</a></p></li>
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Colocalization Benchmark Source open-in-new

Colocalization Benchmark Source