Aside from their synthetic utility, P450 enzymes have also been engineered to better understand their biochemistry. Based on the proposed catalytic cycle, an axially ligated thiolate moiety (cysteine) donates electron density to the metal center aiding in protonation of a ferric-peroxo anion intermediate (−O-O-Fe3+) which upon water loss generates a C-H bond reactive iron-oxo species (O=Fe4+). Alternatively, if the ferric-peroxo anion remains un-protonated, this reactive species can mediate C-C bond cleavage in aldehyde-containing substrates (deformylation). In order to better understand intermediate dichotomy between the ferric-peroxo anion and iron-oxo species, CYP125 (which is responsible for various metabolic processes including cholesterol degradation) was engineered to replace the axial ligated cysteine residue with selenocysteine (SeCYP125). In turn, it was observed that SeCYP125 favors formation of oxidized products vs deformylated products when reacted with cholesterol-26-aldehyde, indicating that increased electron donation from selenocysteine relative to cysteine results in a higher proportion of iron-oxo relative to ferric-peroxo anion (Figure 3).
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Fasan, Rudi (February 22, 2012). "Tuning P450 Enzymes as Oxidation Catalysts". ACS Catalysis. 2 (4): 647–666. doi:10.1021/cs300001x. S2CID 4674699. /wiki/Doi_(identifier)
Fasan, Rudi (February 22, 2012). "Tuning P450 Enzymes as Oxidation Catalysts". ACS Catalysis. 2 (4): 647–666. doi:10.1021/cs300001x. S2CID 4674699. /wiki/Doi_(identifier)
McIntosh, John; Farwell, Christopher; Arnold, Frances (March 20, 2014). "Expanding P450 catalytic reaction space through evolution and engineering". Current Opinion in Chemical Biology. 19: 126–134. doi:10.1016/j.cbpa.2014.02.001. PMC 4008644. PMID 24658056. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008644
Jung, Sang; Lauchli, Ryan; Arnold, Frances (March 14, 2011). "Cytochrome P450: taming a wild type enzyme". Current Opinion in Biotechnology. 22 (6): 809–817. doi:10.1016/j.copbio.2011.02.008. PMC 3118264. PMID 21411308. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118264
Fasan, Rudi (February 22, 2012). "Tuning P450 Enzymes as Oxidation Catalysts". ACS Catalysis. 2 (4): 647–666. doi:10.1021/cs300001x. S2CID 4674699. /wiki/Doi_(identifier)
Fasan, Rudi (February 22, 2012). "Tuning P450 Enzymes as Oxidation Catalysts". ACS Catalysis. 2 (4): 647–666. doi:10.1021/cs300001x. S2CID 4674699. /wiki/Doi_(identifier)
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Dydio, P.; Key, H.; Nazarenko, A.; Rha, J.; Seyedkazemi, V.; Clark, D.; Hartwig, John (October 7, 2016). "An artificial metalloenzyme with the kinetics of native enzymes". Science. 354 (6308): 102–106. Bibcode:2016Sci...354..102D. doi:10.1126/science.aah4427. PMC 11864347. PMID 27846500. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11864347
McIntosh, John; Farwell, Christopher; Arnold, Frances (March 20, 2014). "Expanding P450 catalytic reaction space through evolution and engineering". Current Opinion in Chemical Biology. 19: 126–134. doi:10.1016/j.cbpa.2014.02.001. PMC 4008644. PMID 24658056. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008644
Jung, Sang; Lauchli, Ryan; Arnold, Frances (March 14, 2011). "Cytochrome P450: taming a wild type enzyme". Current Opinion in Biotechnology. 22 (6): 809–817. doi:10.1016/j.copbio.2011.02.008. PMC 3118264. PMID 21411308. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118264
Fasan, Rudi (February 22, 2012). "Tuning P450 Enzymes as Oxidation Catalysts". ACS Catalysis. 2 (4): 647–666. doi:10.1021/cs300001x. S2CID 4674699. /wiki/Doi_(identifier)
Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
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Whitehouse, Christopher; Bell, Stephen; Wong, Luet-Lok (July 18, 2012). "P450BM3 (CYP102A1): connecting the dots". Chemical Society Reviews. 41 (3): 1218–1260. doi:10.1039/C1CS15192D. PMID 22008827. /wiki/Doi_(identifier)
Fasan, Rudi (February 22, 2012). "Tuning P450 Enzymes as Oxidation Catalysts". ACS Catalysis. 2 (4): 647–666. doi:10.1021/cs300001x. S2CID 4674699. /wiki/Doi_(identifier)
Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
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Whitehouse, Christopher; Bell, Stephen; Wong, Luet-Lok (July 18, 2012). "P450BM3 (CYP102A1): connecting the dots". Chemical Society Reviews. 41 (3): 1218–1260. doi:10.1039/C1CS15192D. PMID 22008827. /wiki/Doi_(identifier)
Whitehouse, Christopher; Bell, Stephen; Wong, Luet-Lok (July 18, 2012). "P450BM3 (CYP102A1): connecting the dots". Chemical Society Reviews. 41 (3): 1218–1260. doi:10.1039/C1CS15192D. PMID 22008827. /wiki/Doi_(identifier)
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Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
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Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
Wang, Z. Jane; Renata, Hans; Peck, Nicole; Farwell, Christopher; Coelho, Pedro; Arnold, Frances (May 5, 2014). "Improved Cyclopropanation Activity of Histidine-Ligated Cytochrome P450 Enables the Enantioselective Formal Synthesis of Levomilncipran". Angewandte Chemie International Edition in English. 53 (26): 6810–6813. doi:10.1002/anie.201402809. PMC 4120663. PMID 24802161. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120663
Sivaramakrishnan, Santhosh; Ouellet, Hugues; Matsumura, Hirotoshi; Guan, Shenheng; Loccoz, Pierre; Burlingame, Alma; Montellano, Paul (March 23, 2012). "Proximal Ligand Electron Donation and Reactivity of the Cytochrome P450 Ferric-Peroxo Anion". Journal of the American Chemical Society. 134 (15): 6673–6684. doi:10.1021/ja211499q. PMC 3329582. PMID 22444582. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329582
McIntosh, John; Farwell, Christopher; Arnold, Frances (March 20, 2014). "Expanding P450 catalytic reaction space through evolution and engineering". Current Opinion in Chemical Biology. 19: 126–134. doi:10.1016/j.cbpa.2014.02.001. PMC 4008644. PMID 24658056. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008644
Fasan, Rudi (February 22, 2012). "Tuning P450 Enzymes as Oxidation Catalysts". ACS Catalysis. 2 (4): 647–666. doi:10.1021/cs300001x. S2CID 4674699. /wiki/Doi_(identifier)
Whitehouse, Christopher; Bell, Stephen; Wong, Luet-Lok (July 18, 2012). "P450BM3 (CYP102A1): connecting the dots". Chemical Society Reviews. 41 (3): 1218–1260. doi:10.1039/C1CS15192D. PMID 22008827. /wiki/Doi_(identifier)
Sivaramakrishnan, Santhosh; Ouellet, Hugues; Matsumura, Hirotoshi; Guan, Shenheng; Loccoz, Pierre; Burlingame, Alma; Montellano, Paul (March 23, 2012). "Proximal Ligand Electron Donation and Reactivity of the Cytochrome P450 Ferric-Peroxo Anion". Journal of the American Chemical Society. 134 (15): 6673–6684. doi:10.1021/ja211499q. PMC 3329582. PMID 22444582. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329582
Sivaramakrishnan, Santhosh; Ouellet, Hugues; Matsumura, Hirotoshi; Guan, Shenheng; Loccoz, Pierre; Burlingame, Alma; Montellano, Paul (March 23, 2012). "Proximal Ligand Electron Donation and Reactivity of the Cytochrome P450 Ferric-Peroxo Anion". Journal of the American Chemical Society. 134 (15): 6673–6684. doi:10.1021/ja211499q. PMC 3329582. PMID 22444582. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329582
Sivaramakrishnan, Santhosh; Ouellet, Hugues; Matsumura, Hirotoshi; Guan, Shenheng; Loccoz, Pierre; Burlingame, Alma; Montellano, Paul (March 23, 2012). "Proximal Ligand Electron Donation and Reactivity of the Cytochrome P450 Ferric-Peroxo Anion". Journal of the American Chemical Society. 134 (15): 6673–6684. doi:10.1021/ja211499q. PMC 3329582. PMID 22444582. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329582
Dydio, P.; Key, H.; Nazarenko, A.; Rha, J.; Seyedkazemi, V.; Clark, D.; Hartwig, John (October 7, 2016). "An artificial metalloenzyme with the kinetics of native enzymes". Science. 354 (6308): 102–106. Bibcode:2016Sci...354..102D. doi:10.1126/science.aah4427. PMC 11864347. PMID 27846500. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11864347