Compared with the traditional vaccines such as the whole fixed pathogens or protein molecules, the peptide vaccines have several advantages and disadvantages.
The whole peptide vaccine is to mimic the epitope of an antigen, so epitope design is the most important stage of vaccine development and requires an accurate understanding of the amino acid sequence of the immunogenic protein interested. The designed epitope is expected to generate strong and long-period immuno-response against the pathogen. The followings are the points to consider when designing the epitope:
Skwarczynski M, Toth I (February 2016). "Peptide-based synthetic vaccines". Chemical Science. 7 (2): 842–854. doi:10.1039/C5SC03892H. PMC 5529997. PMID 28791117. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5529997
Melief CJ, van der Burg SH (May 2008). "Immunotherapy of established (pre)malignant disease by synthetic long peptide vaccines". Nature Reviews. Cancer. 8 (5): 351–360. doi:10.1038/nrc2373. PMID 18418403. S2CID 205468352. /wiki/Doi_(identifier)
Schneble E, Clifton GT, Hale DF, Peoples GE (2016). "Peptide-Based Cancer Vaccine Strategies and Clinical Results". In Thomas S (ed.). Vaccine Design. Methods in Molecular Biology. Vol. 1403. New York, NY: Springer. pp. 797–817. doi:10.1007/978-1-4939-3387-7_46. ISBN 978-1-4939-3387-7. PMID 27076168. 978-1-4939-3387-7
Skwarczynski M, Toth I (February 2016). "Peptide-based synthetic vaccines". Chemical Science. 7 (2): 842–854. doi:10.1039/C5SC03892H. PMC 5529997. PMID 28791117. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5529997
Pearson MS, Pickering DA, Tribolet L, Cooper L, Mulvenna J, Oliveira LM, et al. (May 2010). "Neutralizing antibodies to the hookworm hemoglobinase Na-APR-1: implications for a multivalent vaccine against hookworm infection and schistosomiasis". The Journal of Infectious Diseases. 201 (10): 1561–1569. doi:10.1086/651953. PMID 20367477. https://doi.org/10.1086%2F651953
Diemert DJ, Pinto AG, Freire J, Jariwala A, Santiago H, Hamilton RG, et al. (July 2012). "Generalized urticaria induced by the Na-ASP-2 hookworm vaccine: implications for the development of vaccines against helminths". The Journal of Allergy and Clinical Immunology. 130 (1): 169–76.e6. doi:10.1016/j.jaci.2012.04.027. PMID 22633322. https://doi.org/10.1016%2Fj.jaci.2012.04.027
Cooper JA, Hayman W, Reed C, Kagawa H, Good MF, Saul A (April 1997). "Mapping of conformational B cell epitopes within alpha-helical coiled coil proteins". Molecular Immunology. 34 (6): 433–440. doi:10.1016/S0161-5890(97)00056-4. PMID 9307059. /wiki/Doi_(identifier)
Azmi F, Ahmad Fuaad AA, Skwarczynski M, Toth I (March 2014). "Recent progress in adjuvant discovery for peptide-based subunit vaccines". Human Vaccines & Immunotherapeutics. 10 (3): 778–796. doi:10.4161/hv.27332. PMC 4130256. PMID 24300669. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4130256
Marincola FM, Rivoltini L, Salgaller ML, Player M, Rosenberg SA (July 1996). "Differential anti-MART-1/MelanA CTL activity in peripheral blood of HLA-A2 melanoma patients in comparison to healthy donors: evidence of in vivo priming by tumor cells". Journal of Immunotherapy with Emphasis on Tumor Immunology. 19 (4): 266–277. doi:10.1097/00002371-199607000-00003. PMID 8877721. /wiki/Doi_(identifier)
Neal DE, Sharples L, Smith K, Fennelly J, Hall RR, Harris AL (April 1990). "The epidermal growth factor receptor and the prognosis of bladder cancer". Cancer. 65 (7): 1619–1625. doi:10.1002/1097-0142(19900401)65:7<1619::aid-cncr2820650728>3.0.co;2-q. PMID 2311071. S2CID 12449093. https://doi.org/10.1002%2F1097-0142%2819900401%2965%3A7%3C1619%3A%3Aaid-cncr2820650728%3E3.0.co%3B2-q
Palatnik-de-Sousa CB, Soares IS, Rosa DS (2018-04-18). "Editorial: Epitope Discovery and Synthetic Vaccine Design". Frontiers in Immunology. 9: 826. doi:10.3389/fimmu.2018.00826. PMC 5915546. PMID 29720983. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915546
Firbas C, Jilma B, Tauber E, Buerger V, Jelovcan S, Lingnau K, et al. (May 2006). "Immunogenicity and safety of a novel therapeutic hepatitis C virus (HCV) peptide vaccine: a randomized, placebo controlled trial for dose optimization in 128 healthy subjects". Vaccine. 24 (20): 4343–4353. doi:10.1016/j.vaccine.2006.03.009. PMID 16581161. /wiki/Doi_(identifier)
Atsmon J, Caraco Y, Ziv-Sefer S, Shaikevich D, Abramov E, Volokhov I, et al. (October 2014). "Priming by a novel universal influenza vaccine (Multimeric-001)-a gateway for improving immune response in the elderly population". Vaccine. 32 (44): 5816–5823. doi:10.1016/j.vaccine.2014.08.031. PMID 25173483. /wiki/Doi_(identifier)
van Doorn E, Liu H, Ben-Yedidia T, Hassin S, Visontai I, Norley S, et al. (March 2017). "Evaluating the immunogenicity and safety of a BiondVax-developed universal influenza vaccine (Multimeric-001) either as a standalone vaccine or as a primer to H5N1 influenza vaccine: Phase IIb study protocol". Medicine. 96 (11): e6339. doi:10.1097/md.0000000000006339. PMC 5369918. PMID 28296763. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5369918
Wiessner C, Wiederhold KH, Tissot AC, Frey P, Danner S, Jacobson LH, et al. (June 2011). "The second-generation active Aβ immunotherapy CAD106 reduces amyloid accumulation in APP transgenic mice while minimizing potential side effects". The Journal of Neuroscience. 31 (25): 9323–9331. doi:10.1523/jneurosci.0293-11.2011. PMC 6623465. PMID 21697382. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6623465
Wang CY, Finstad CL, Walfield AM, Sia C, Sokoll KK, Chang TY, et al. (April 2007). "Site-specific UBITh amyloid-beta vaccine for immunotherapy of Alzheimer's disease". Vaccine. 25 (16): 3041–3052. doi:10.1016/j.vaccine.2007.01.031. PMID 17287052. /wiki/Doi_(identifier)
Davtyan H, Ghochikyan A, Petrushina I, Hovakimyan A, Davtyan A, Poghosyan A, et al. (March 2013). "Immunogenicity, efficacy, safety, and mechanism of action of epitope vaccine (Lu AF20513) for Alzheimer's disease: prelude to a clinical trial". The Journal of Neuroscience. 33 (11): 4923–4934. doi:10.1523/jneurosci.4672-12.2013. PMC 3634356. PMID 23486963. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634356
Lacosta AM, Pascual-Lucas M, Pesini P, Casabona D, Pérez-Grijalba V, Marcos-Campos I, et al. (January 2018). "Safety, tolerability and immunogenicity of an active anti-Aβ40 vaccine (ABvac40) in patients with Alzheimer's disease: a randomised, double-blind, placebo-controlled, phase I trial". Alzheimer's Research & Therapy. 10 (1): 12. doi:10.1186/s13195-018-0340-8. PMC 5789644. PMID 29378651. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5789644
Hickman DT, López-Deber MP, Ndao DM, Silva AB, Nand D, Pihlgren M, et al. (April 2011). "Sequence-independent control of peptide conformation in liposomal vaccines for targeting protein misfolding diseases". The Journal of Biological Chemistry. 286 (16): 13966–13976. doi:10.1074/jbc.m110.186338. PMC 3077597. PMID 21343310. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077597
Kontsekova E, Zilka N, Kovacech B, Novak P, Novak M (2014). "First-in-man tau vaccine targeting structural determinants essential for pathological tau-tau interaction reduces tau oligomerisation and neurofibrillary degeneration in an Alzheimer's disease model". Alzheimer's Research & Therapy. 6 (4): 44. doi:10.1186/alzrt278. PMC 4255368. PMID 25478017. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4255368