The first observations of an autoinducer-controlled phenotype in bacteria were reported in 1970, by Kenneth Nealson, Terry Platt, and J. Woodland Hastings, who observed what they described as a conditioning of the medium in which they had grown the bioluminescent marine bacterium Aliivibrio fischeri. These bacteria did not synthesize luciferase—and therefore did not luminesce—in freshly inoculated culture but only after the bacterial population had increased significantly.
Because Nealson, Platt, and Hastings attributed the conditioning of the growth medium to the growing population of cells itself, they referred to the phenomenon as autoinduction.
In 1994, after study of the phenomenon had expanded into several additional bacteria, Stephen Winans did not believe the word autoinduction fully characterized the true process so, in a review article coauthored with W. Claiborne Fuqua and E. Peter Greenberg, he introduced the term quorum sensing. Its use also avoided confusion between the terms autoinduction and autoregulation. The new term was not stumbled onto, but rather created through trial and error. Among the alternatives that Winans had created and considered were gridlockins, communiolins, and quoromones.
The quorum-sensing function is based on the local density of the bacterial population in the immediate environment. It can occur within a single bacterial species, as well as between diverse species. Both gram-positive and gram-negative bacteria use quorum sensing, but there are some major differences in their mechanisms.
For the bacteria to use quorum sensing constitutively, they must possess three abilities: secretion of a signaling molecule, secretion of an autoinducer (to detect the change in concentration of signaling molecules), and regulation of gene transcription as a response. This process is highly dependent on the diffusion mechanism of the signaling molecules. QS signaling molecules are usually secreted at a low level by individual bacteria. At low cell density, the molecules may just diffuse away. At high cell density, the local concentration of signaling molecules may exceed its threshold level, and trigger changes in gene expression.
When gram-positive bacteria detect high concentration of AIPs in their environment, that happens by way of AIPs binding to a receptor to activate a kinase. The kinase phosphorylates a transcription factor, which regulates gene transcription. This is called a two-component system.
Some gram-negative bacteria may use the two-component system as well.
The species is known for its ability to use quorum sensing to hunt in special packs with thousands of individual cells, lending to M. xanthus's name "the wolf packs." M. xanthus is inclined to behave in a multicellular fashion. In the presence of many cells, it uses these "wolf packs" to form "highly structured biofilms that include tentacle-like packs of surface-gliding cell groups, synchronized rippling waves of oscillating cells and massive spore-filled aggregates that protrude upwards from the substratum to form fruiting bodies." On the fringes of this film, individual cells can be observed "gliding across the surface, but the majority of cells are observed in large tendril-shaped groups" using S-motility.
This bacterium was previously considered a fish pathogen, but it has recently emerged as a human pathogen. Aeromonas sp. have been isolated from various infected sites from patients (bile, blood, peritoneal fluid, pus, stool and urine). All isolates produced the two principal AHLs, N-butanoylhomoserine lactone (C4-HSL) and N-hexanoyl homoserine lactone (C6-HSL). It has been documented that Aeromonas sobria has produced C6-HSL and two additional AHLs with N-acyl side chain longer than C6.
Three-dimensional structures of proteins involved in quorum sensing were first published in 2001, when the crystal structures of three LuxS orthologs were determined by X-ray crystallography. In 2002, the crystal structure of the receptor LuxP of Vibrio harveyi with its inducer AI-2 (which is one of the few biomolecules containing boron) bound to it was also determined. Many bacterial species, including E. coli, an enteric bacterium and model organism for gram-negative bacteria, produce AI-2. A comparative genomic and phylogenetic analysis of 138 genomes of bacteria, archaea, and eukaryotes found that "the LuxS enzyme required for AI-2 synthesis is widespread in bacteria, while the periplasmic binding protein LuxP is present only in Vibrio strains," leading to the conclusion that either "other organisms may use components different from the AI-2 signal transduction system of Vibrio strains to sense the signal of AI-2 or they do not have such a quorum sensing system at all." Vibrio species utilize Qrr RNAs, small non-coding RNAs, that are activated by these autoinducers to target cell density master regulators. Farnesol is used by the fungus Candida albicans as a quorum sensing molecule that inhibits filamentation.
A database of quorum-sensing peptides is available under the name Quorumpeps.
The majority of quorum sensing systems that fall under the "two-gene" (an autoinducer synthase coupled with a receptor molecule) paradigm as defined by the Vibrio fischeri system occur in the gram-negative Pseudomonadota. A comparison between the Pseudomonadota phylogeny as generated by 16S ribosomal RNA sequences and phylogenies of LuxI-, LuxR-, or LuxS-homologs shows a notably high level of global similarity. Overall, the quorum sensing genes seem to have diverged along with the Pseudomonadota phylum as a whole. This indicates that these quorum sensing systems are quite ancient, and arose very early in the Pseudomonadota lineage.
LuxI and LuxR have coevolved through a long history of horizontal gene transfer (HGT) events. An early study reconciling their gene trees with the rRNA tree suggested frequent HGT events for both LuxI and LuxR, indicating that they are horizontally transferred together and coevolve due to their functional dependency. Similarly, in QS systems in bacteria associated with Populus deltoides, the gene trees for luxI and luxR show high topological similarity, indicating coevolution of cognate pairs. In addition to horizontal transfer of complete LuxI/LuxR-type QS systems, many Proteobacteria genomes exhibit an excess of LuxR genes or cases with only LuxR but not LuxI, acquired from different sources via HGT. Due to the frequent transfer of functional pairs of homologs (i.e., LuxI/LuxR-type systems from multiple independent sources), it is possible that the regulatory hierarchy formed by the LuxI/LuxR and RhlR-RhlI systems is a result of sequential integration of circuits obtained from different sources, due to interactions between multiple homologs. Interestingly, LuxI genes have likely undergone horizontal gene transfer from Proteobacteria to other lineages, as they have been detected in Nitrospira lineage II.
Next to the potential antimicrobial functionality, quorum-sensing derived molecules, especially the peptides, are being investigated for their use in other therapeutic domains as well, including immunology, central nervous system disorders and oncology. Quorum-sensing peptides have been demonstrated to interact with cancer cells, as well as to permeate the blood–brain barrier reaching the brain parenchyma.
Quorum sensing (QS) is used by bacteria to form biofilms. Quorum sensing is used by bacteria to form biofilms because the process determines if the minimum number of bacteria necessary for biofilm formation are present. The criteria to form a biofilm is dependent on a certain density of bacteria rather than a certain number of bacteria being present. When aggregated in high enough densities, some bacteria may form biofilms to protect themselves from biotic or abiotic threats. Quorum sensing is used by both Gram-positive and Gram-negative bacteria because it aids cellular reproduction. Once in a biofilm, bacteria can communicate with other bacteria of the same species. Bacteria can also communicate with other species of bacteria. This communication is enabled through autoinducers used by the bacteria.
Additionally, certain responses can be generated by the host organism in response to the certain bacterial autoinducers. Despite the fact that specific bacterial quorum sensing systems are different, for example the target genes, signal relay mechanisms, and chemical signals used between bacteria, the ability to coordinate gene expression for a specific species of bacteria remains the same. This ability alludes to the larger idea that bacteria have potential to become a multicellular bacterial body.
Secondly, biofilms may also serve to transport nutrients into the microbial community or transport toxins out by means of channels that permeate the extracellular polymeric matrix (like cellulose) that holds the cells together. Finally, biofilms are an ideal environment for horizontal gene transfer through either conjugation or environmental DNA (eDNA) that exists in the biofilm matrix.
The process of biofilm development is often triggered by environmental signals, and bacteria are proven to require flagella to successfully approach a surface, adhere to it, and form the biofilm. As cells either replicate or aggregate in a location, the concentration of autoinducers outside of the cells increases until a critical mass threshold is reached. At this point, it is energetically unfavorable for intracellular autoinducers to leave the cell and they bind to receptors and trigger a signaling cascade to initiate gene expression and begin secreting an extracellular polysaccharide to encase themselves inside.
One modern method of preventing biofilm development without the use of antibiotics is with anti-QS substances, such (naringenin, taxifolin, etc.) that can be utilized as alternative form of therapy against bacterial virulence.
QS is important to plant-pathogen interactions, and their study has also contributed to the QS field more generally. The first X-ray crystallography results for some of the key proteins were those of Pantoea stewartii subsp. stewartii in maize/corn and Agrobacterium tumefaciens, a crop pathogen with a wider range of hosts. These interactions are facilitated by quorum-sensing molecules and play a major role in maintaining the pathogenicity of bacteria towards other hosts, such as humans. This mechanism can be understood by looking at the effects of N-Acyl homoserine lactone (AHL), one of the quorum sensing-signaling molecules in gram-negative bacteria, on plants. The model organism used is Arabidopsis thaliana. Further insights reveal that AHLs influence plant immune responses and can alter plant hormone levels, thereby affecting plant growth and susceptibility to infection. Understanding these dynamics is crucial for developing innovative strategies to combat plant diseases and improve agricultural productivity. Researchers have also noted that certain plants can degrade these signaling molecules, potentially as a defensive strategy to disrupt bacterial communication. This interplay between bacterial signaling and plant responses suggests a complex co-evolutionary relationship that could be exploited to enhance crop resistance to bacterial pathogens.
The role of AHLs having long carbon-chains (C12, C14), which have an unknown receptor mechanism, is less well understood than AHLs having short carbon-chains (C4, C6, C8), which are perceived by the G protein-coupled receptor. A phenomenon called "AHL priming", which is a dependent signalling pathway, enhanced our knowledge of long-chain AHLs. The role of quorum-sensing molecules was better explained according to three categories: host physiology–based impact of quorum sensing molecules; ecological effects; and cellular signaling. Calcium signalling and calmodulin have a large role in short-chain AHLs' response in Arabidopsis. Research was also conducted on barley and the crop called yam bean (Pachyrhizus erosus) that reveals the AHLs determining the detoxification enzymes called GST were found less in yam bean.
Quorum sensing-based regulatory systems are necessary to plant-disease-causing bacteria. Looking towards developing new strategies based on plant-associated microbiomes, the aim of further study is to improve the quantity and quality of the food supply. Further research into this inter-kingdom communication also enhances the possibility of learning about quorum sensing in humans. This exploration could open new avenues for managing microbial communities in agricultural settings, potentially leading to the development of more sustainable farming practices that leverage natural microbial processes to boost crop resilience and productivity.
Quorum quenching is the process of preventing quorum sensing by disrupting signalling. This is achieved by inactivating signalling enzymes, by introducing molecules that mimic signalling molecules and block their receptors, by degrading signalling molecules themselves, or by a modification of the quorum sensing signals due to an enzyme activity.
Two groups of well-known mimicking molecules include halogenated furanones, which mimic AHL molecules, and synthetic Al peptides (AIPs), which mimic naturally occurring AIPs. These groups inhibit receptors from binding substrate or decrease the concentration of receptors in the cell. Furanones have also been found to act on AHL-dependant transcriptional activity, whereby the half life of the autoinducer-binding LuxR protein is significantly shortened.
Recently, a well-studied quorum quenching bacterial strain (KM1S) was isolated and its AHL degradation kinetics were studied using rapid resolution liquid chromatography (RRLC). RRLC efficiently separates components of a mixture to a high degree of sensitivity, based on their affinities for different liquid phases. It was found that the genome of this strain encoded an inactivation enzyme with distinct motifs targeting the degradation of AHLs.
As mentioned before, N-acyl-homoserine lactones (AHL) are the quorum sensing signaling molecules of the gram-negative bacteria. However, these molecules may have different functional groups on their acyl chain, and also a different length of acyl chain. Therefore, there exist many different AHL signaling molecules, for example, 3-oxododecanoyl-L-homoserine lactone (3OC12-HSL) or 3-hydroxydodecanoyl-L-homoserine lactone (3OHC12-HSL). The modification of those quorum sensing (QS) signaling molecules is another sort of quorum quenching. This can be carried out by an oxidoreductase activity. As an example, we will discuss the interaction between a host, Hydra vulgaris, and the main colonizer of its epithelial cell surfaces, Curvibacter spp. Those bacteria produce 3-oxo-HSL quorum sensing molecules. However, the oxidoreductase activity of the polyp Hydra is able to modify the 3-oxo-HSL into their 3-hydroxy-HSL counterparts. We can characterize this as quorum quenching since there is an interference with quorum sensing molecules. In this case, the outcomes differ from simple QS inactivation: the host modification results in a phenotypic switch of Curvibacter, which modifies its ability to colonize the epithelial cell surfaces of H. vulgaris.
Applications of quorum quenching that have been exploited by humans include the use of AHL-degrading bacteria in aquacultures to limit the spread of diseases in aquatic populations of fish, mollusks and crustaceans. This technique has also been translated to agriculture, to restrict the spread of pathogenic bacteria that use quorum sensing in plants. Anti-biofouling is another process that exploits quorum quenching bacteria to mediate the dissociation of unwanted biofilms aggregating on wet surfaces, such as medical devices, transportation infrastructure and water systems. Quorum quenching is recently studied for the control of fouling and emerging contaminants in electro membrane bioreactors (eMBRs) for the advanced treatment of wastewater. Extracts of several traditional medicinal herbs display quorum quenching activity, and have potential antibacterial applications.
Remarkable advancements have been and are continuing to be made in recent years in our understanding of synthetic biology in terms of endocrine and paracrine signaling mechanisms, and the myriad of modes by which bacteria record domestic and foreign cell numbers. The modulation of gene expression in response to oscillations in cell-population density is thanks to the QS techniques regulating bacterial communication natural and artificial cultures. It is also clear that intra- and inter-species cell–cell communication occurs and is regulated by quorum sensing systems. Further, there is mounting data demonstrating that autoinducer signals elicit specific responses from eukaryotic hosts.
Quorum sensing can be a useful tool for improving the function of self-organizing networks such as the SECOAS (Self-Organizing Collegiate Sensor) environmental monitoring system. In this system, individual nodes sense that there is a population of other nodes with similar data to report. The population then nominates just one node to report the data, resulting in power savings. Ad hoc wireless networks can also benefit from quorum sensing, by allowing the system to detect and respond to network conditions.
Quorum sensing can also be used to coordinate the behavior of autonomous robot swarms. Using a process similar to that used by Temnothorax ants, robots can make rapid group decisions without the direction of a controller.
Despite recent advancements, the true nature of these back-and-forth conversations remains a mystery, and further rigorous research targeting inter- and intra- species communication is still necessary to maximize knowledge of quorum sensing and its potential to improve research and treatments of cancer and bacterial diseases. The code to understanding these complex bacterial languages is to decipher the impact of the words.
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