In 2008, Hunter developed GSK's external innovation strategy and was responsible for developing the concept of the Stevenage Bioscience Catalyst and obtaining funding from government and other bodies. In 2010, she left GSK to establish OI Pharma Partners. which was established as a consultancy for the promotion of open innovation in the life sciences, working with governments, academic organisations and companies to formulate open innovation strategies and best practice.
In 2013, Hunter was appointed CEO of the BBSRC. She has also been a non-executive director of Proximagen group plc and Chiltern International Group (2016–present). She was a member of the governing councils of Royal Holloway and Bedford College, University of London and of Hertfordshire University. In 2016 she left the BBSRC and joined Stratified Medical which became BenevolentAI, establishing the drug discovery arm of the organisation. She retired from BenevolentAI in 2020 but remains as a board director. In 2019 she was appointed chair of the trustees of the Sainsbury Laboratories at Norwich. In 2020 she was also appointed as chair of the board of the Stevenage Bioscience Catalyst and chair of the board of Brainomix, an AI enabled imaging company.
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