PhyloXML

<h2 id="basic-phyloxml-example">Basic phyloXML example</h2>
<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" 
  xmlns="http://www.phyloxml.org">
  <phylogeny rooted="true">
    <name>example from Prof. Joe Felsenstein's book "Inferring Phylogenies"</name>
    <description>MrBayes based on MAFFT alignment</description>
    <clade>
      <clade branch_length="0.06">
        <confidence type="probability">0.88</confidence>
        <clade branch_length="0.102">
          <name>A</name>
        </clade>
        <clade branch_length="0.23">
          <name>B</name>
        </clade>
      </clade>
      <clade branch_length="0.5">
        <name>C</name>
      </clade>
    </clade>
  </phylogeny>
</phyloxml>

<h2 id="external-links">External links</h2>
<ul><li><a href="http://www.phyloxml.org">www.phyloxml.org</a></li>
<li><a href="https://sites.google.com/view/archaeopteryx">Archaeopteryx program</a></li></ul>

<h2 id="references">References</h2>

<ol>
<li id="fn:1"><p>Han, Mira V.; Zmasek, Christian M. (2009). "phyloXML: XML for evolutionary biology and comparative genomics". BMC Bioinformatics. 10. United Kingdom: BioMed Central: 356. doi:10.1186/1471-2105-10-356. PMC 2774328. PMID 19860910. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774328" target="_blank">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774328</a> <a href="#fnref:1" class="footnote-back-ref">↩</a></p></li>
</ol>

PhyloXML open-in-new

PhyloXML