Since the 1990s, increasing molecular and anatomical data have been applied to the classification of animals. Both types of data support the idea that afrotherian mammals are descended from a single common ancestor to the exclusion of other mammals. On the anatomical side, features shared by most, if not all, afrotheres include high vertebral counts, aspects of placental membrane formation, the shape of the ankle bones, the relatively late eruption of the permanent dentition, and undescended testicles remaining in the body near the kidneys. The snout is unusually long and mobile in several Afrotherian species, and this was pointed out as a possible shared-derived character. Studies of genomic data, including millions of aligned nucleotides sampled for a growing number of placental mammals, also support Afrotheria as a clade. Additionally, there might be some dental synapomorphies uniting afroinsectiphilians, if not afrotheres as a whole: p4 talonid and trigonid of similar breadth, a prominent p4 hypoconid, presence of a P4 metacone and absence of parastyles on M1–2.
Afrotheria as a clade has usually been discussed without a Linnaean rank, but has been assigned the rank of cohort, magnorder, and superorder. One reconstruction, which applies the molecular clock, proposes that the oldest split occurred between Afrotheria and the other two some 105 million years ago in the mid-Cretaceous, when the African continent was separated from other major land masses. This idea is consistent with the fossil record of Xenarthra, which is restricted to South America (following recent consensus that Eurotamandua is not a xenarthran).
However, Afrotheria itself does not have a fossil record restricted to Africa, and appears in fact to have evolved in the continent's isolation.[contradictory][need quotation to verify] More recent, genomic-scale phylogenies favor the hypothesis that Afrotheria and Xenarthra comprise sister taxa at the base of the placental mammal radiation, suggesting an ancient Gondwanan clade of placental mammals. A 2021 morphological study also proposed to render Meridiungulata polyphyletic and recognise most of its clades as part of a group called Sudamericungulata, closely related to hyraxes, while Litopterna remains a sister taxon to Perissodactyla.
Relations between the various afrotherian orders are still being studied. On the basis of molecular studies, elephants and manatees appear to be related, and likewise elephant shrews and aardvarks. These findings are compatible with the work of earlier anatomists.
Many extant members of Afrotheria appear to have a high risk of extinction (perhaps related to the large size of many). Species loss within this already small group would comprise a particularly great loss of genetic and evolutionary diversity. The IUCN Afrotheria Specialist Group notes that Afrotheria, as currently reconstructed, includes nearly a third of all mammalian orders currently found in Africa and Madagascar, but only 75 of more than 1,200 mammalian species in those areas.
While most extant species assigned to Afrotheria live in Africa, some (such as the Indian elephant and three of the four sirenian species) occur elsewhere; many of these are also endangered. Prior to the Quaternary extinction event, proboscideans were present on every continent of the world except Australia and Antarctica. Hyraxes lived in much of Eurasia as recently as the end of the Pliocene. The extinct afrotherian orders of embrithopods and desmostylians were also once widely distributed. However, the desmostylians have recently been viewed as possible perissodactyls, rather than afrotheres, although this is still controversial. The taxonomic placement of embrithopods is also not clear.
Stanhope, M. J.; Waddell, V. G.; Madsen, O.; de Jong, W.; Hedges, S. B.; Cleven, G. C.; Kao, D.; Springer, M. S. (1998). "Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals". Proceedings of the National Academy of Sciences. 95 (17): 9967–9972. Bibcode:1998PNAS...95.9967S. doi:10.1073/pnas.95.17.9967. PMC 21445. PMID 9707584. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC21445
Springer, Mark S.; Michael J. Stanhope; Ole Madsen; Wilfried W. de Jong (2004). "Molecules consolidate the placental mammal tree" (PDF). Trends in Ecology & Evolution. 19 (8): 430–438. doi:10.1016/j.tree.2004.05.006. PMID 16701301. S2CID 1508898. http://faculty.cns.uni.edu/~spradlin/evolution/Readings.blocked/mammaltrees.pdf
Robinson, T. J.; Fu, B.; Ferguson-Smith, M. A.; Yang, F. (2004). "Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora". Proceedings of the Royal Society B: Biological Sciences. 271 (1547): 1477–1484. doi:10.1098/rspb.2004.2754. PMC 1691750. PMID 15306319. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1691750
Nishihara, H.; Satta, Y.; Nikaido, M.; Thewissen, J.G.M.; Stanhope, M.J.; Okada, N. (2005). "A retroposon analysis of Afrotherian phylogeny". Molecular Biology and Evolution. 22 (9): 1823–1833. doi:10.1093/molbev/msi179. PMID 15930154. https://doi.org/10.1093%2Fmolbev%2Fmsi179
Asher RJ, Bennett N, Lehmann T (2009). "The new framework for understanding placental mammal evolution". BioEssays. 31 (8): 853–864. doi:10.1002/bies.200900053. PMID 19582725. https://doi.org/10.1002%2Fbies.200900053
Tabuce, R.; Marivaux, L.; Adaci, M.; Bensalah, M.; Hartenberger, J.-L.; Mahboubi, M.; Mebrouk, F.; Tafforeau, P.; Jaeger, J.-J. (2007). "Early Tertiary mammals from North Africa reinforce the molecular Afrotheria clade". Proceedings of the Royal Society B: Biological Sciences. 274 (1614): 1159–1166. doi:10.1098/rspb.2006.0229. PMC 2189562. PMID 17329227. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2189562
Seiffert, Erik R (2007). "A new estimate of afrotherian phylogeny based on simultaneous analysis of genomic, morphological, and fossil evidence". BMC Evolutionary Biology. 7 (1): 224. Bibcode:2007BMCEE...7..224S. doi:10.1186/1471-2148-7-224. PMC 2248600. PMID 17999766. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2248600
Sánchez-Villagra, Marcelo R.; Narita, Yuichi; Kuratani, Shigeru (2007). "Thoracolumbar vertebral number: The first skeletal synapomorphy for afrotherian mammals". Systematics and Biodiversity. 5 (1): 1–7. Bibcode:2007SyBio...5Q...1S. doi:10.1017/S1477200006002258. S2CID 85675984. /wiki/Bibcode_(identifier)
Stanhope, M. J.; Waddell, V. G.; Madsen, O.; de Jong, W.; Hedges, S. B.; Cleven, G. C.; Kao, D.; Springer, M. S. (1998). "Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals". Proceedings of the National Academy of Sciences. 95 (17): 9967–9972. Bibcode:1998PNAS...95.9967S. doi:10.1073/pnas.95.17.9967. PMC 21445. PMID 9707584. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC21445
Le Gros Clark, W.E. & C.F. Sonntag (1926). "A monograph of Orycteropus afer III, the skull, the skeleton of the trunk, and limbs". Proceedings of the Zoological Society of London. 30: 445–485.
DeJong W.W.; Zweers A.; Goodman M. (1981). "Relationship of aardvark to elephants, hyraxes and sea cows from alpha-crystallin sequences". Nature. 292 (5823): 538–540. Bibcode:1981Natur.292..538D. doi:10.1038/292538a0. PMID 7254349. S2CID 4256271. /wiki/Bibcode_(identifier)
DeJong, W.W.; J.A.M. Leunissen & G.J. Wistow (1993). "Eye lens crystallins and the phylogeny of placental orders: evidence for a Macroscelid–Paenungulate clade?". In F. S. Szalay; M. J. Novacek & M.C. McKenna (eds.). Mammal Phylogeny. New York: Springer Verlag. pp. 5–12.
Porter, Calvin A.; Goodman, Morris; Stanhope, Michael J. (1996). "Evidence on mammalian phylogeny from sequences of Exon 28 of the von Willebrand Factor gene". Molecular Phylogenetics and Evolution. 5 (1): 89–101. Bibcode:1996MolPE...5...89P. doi:10.1006/mpev.1996.0008. PMID 8673300. https://www.researchgate.net/publication/14529043
Springer, M. S.; Cleven, Gregory C.; Madsen, Ole; De Jong, Wilfried W.; Waddell, Victor G.; Amrine, Heather M.; Stanhope, Michael J. (1997). "Endemic African mammals shake the phylogenetic tree". Nature. 388 (6637): 61–64. Bibcode:1997Natur.388R..61S. doi:10.1038/40386. hdl:2066/28247. PMID 9214502. http://dare.uva.nl/document/34869
Simpson, G. G. (1945). "The principles of classification and a classification of mammals". Bulletin of the American Museum of Natural History. 85: 1–350.
Tabuce, Rodolphe; Asher, Robert J.; Lehmann, Thomas (2008). "Afrotherian mammals: a review of current data" (PDF). Mammalia. 72 (1): 2–14. doi:10.1515/MAMM.2008.004. S2CID 46133294. Archived from the original on 2021-08-01. Retrieved 2023-04-30. https://web.archive.org/web/20210801180753/http://phylodiversity.net/azanne/csfar/images/d/d9/Afrotherian_mammals.pdf
Gheerbrant, Emmanuel; Amaghzaz, Mbarek; Bouya, Baadi; Goussard, Florent; Letenneur, Charlène (2014). "Ocepeia (Middle Paleocene of Morocco): The Oldest Skull of an Afrotherian Mammal". PLOS ONE. 9 (2): e89739. Bibcode:2014PLoSO...989739G. doi:10.1371/journal.pone.0089739. PMC 3935939. PMID 24587000. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935939
Sánchez-Villagra, Marcelo R.; Narita, Yuichi; Kuratani, Shigeru (2007). "Thoracolumbar vertebral number: The first skeletal synapomorphy for afrotherian mammals". Systematics and Biodiversity. 5 (1): 1–7. Bibcode:2007SyBio...5Q...1S. doi:10.1017/S1477200006002258. S2CID 85675984. /wiki/Bibcode_(identifier)
Mess, Andrea; Carter, Anthony M. (2006). "Evolutionary transformations of fetal membrane characters in Eutheria with special reference to Afrotheria". Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 306B (2): 140–163. Bibcode:2006JEZB..306..140M. doi:10.1002/jez.b.21079. PMID 16254985. https://doi.org/10.1002%2Fjez.b.21079
Tabuce, R.; Marivaux, L.; Adaci, M.; Bensalah, M.; Hartenberger, J.-L.; Mahboubi, M.; Mebrouk, F.; Tafforeau, P.; Jaeger, J.-J. (2007). "Early Tertiary mammals from North Africa reinforce the molecular Afrotheria clade". Proceedings of the Royal Society B: Biological Sciences. 274 (1614): 1159–1166. doi:10.1098/rspb.2006.0229. PMC 2189562. PMID 17329227. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2189562
Seiffert, Erik R (2007). "A new estimate of afrotherian phylogeny based on simultaneous analysis of genomic, morphological, and fossil evidence". BMC Evolutionary Biology. 7 (1): 224. Bibcode:2007BMCEE...7..224S. doi:10.1186/1471-2148-7-224. PMC 2248600. PMID 17999766. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2248600
Asher, Robert J; Lehmann, Thomas (2008). "Dental eruption in afrotherian mammals". BMC Biology. 6 (1): 14. doi:10.1186/1741-7007-6-14. PMC 2292681. PMID 18366669. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2292681
Sharma, Virag; Lehmann, Thomas; Stuckas, Heiko; Funke, Liane; Hiller, Michael (2018). "Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals". PLOS Biology. 16 (6): e2005293. doi:10.1371/journal.pbio.2005293. ISSN 1545-7885. PMC 6023123. PMID 29953435. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6023123
Hedges, SB (2001). "Afrotheria: Plate tectonics meets genomics". Proc Natl Acad Sci U S A. 98 (1): 1–2. Bibcode:2001PNAS...98....1H. doi:10.1073/pnas.98.1.1. PMC 33345. PMID 11136239. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC33345
Murphy, W. J.; Pringle, T. H.; Crider, T. A.; Springer, M. S.; Miller, W. (2007). "Using genomic data to unravel the root of the placental mammal phylogeny". Genome Research. 17 (4): 413–421. doi:10.1101/gr.5918807. PMC 1832088. PMID 17322288. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1832088
Nikolaev, Sergey; Montoya-Burgos, Juan I.; Margulies, Elliott H.; NISC Comparative Sequencing Program; Rougemont, Jacques; Nyffeler, Bruno; Antonarakis, Stylianos E. (2007). "Early History of Mammals Is Elucidated with the ENCODE Multiple Species Sequencing Data". PLOS Genetics. 3 (1): e2. doi:10.1371/journal.pgen.0030002. PMC 1761045. PMID 17206863. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1761045
Seiffert, Erik R (2007). "A new estimate of afrotherian phylogeny based on simultaneous analysis of genomic, morphological, and fossil evidence". BMC Evolutionary Biology. 7 (1): 224. Bibcode:2007BMCEE...7..224S. doi:10.1186/1471-2148-7-224. PMC 2248600. PMID 17999766. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2248600
Cote S, Werdelin L, Seiffert ER, Barry JC (March 2007). "Additional material of the enigmatic Early Miocene mammal Kelba and its relationship to the order Ptolemaiida". Proc Natl Acad Sci USA. 104 (13): 5510–5. Bibcode:2007PNAS..104.5510C. doi:10.1073/pnas.0700441104. PMC 1838468. PMID 17372202. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1838468
William J. Murphy; Eduardo Eizirik; Mark S. Springer; et al. (14 December 2001). "Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics" (PDF). Science. 294 (5550): 2348–2351. Bibcode:2001Sci...294.2348M. doi:10.1126/science.1067179. PMID 11743200. S2CID 34367609. Archived from the original (PDF) on 27 March 2016. Retrieved 15 May 2014. https://web.archive.org/web/20160327084325/http://www.zi.ku.dk/evolbiology/courses/ME04/7_9/Murphy2001-phyl.pdf
Asher RJ, Bennett N, Lehmann T (2009). "The new framework for understanding placental mammal evolution". BioEssays. 31 (8): 853–864. doi:10.1002/bies.200900053. PMID 19582725. https://doi.org/10.1002%2Fbies.200900053
Springer, M. S.; Murphy, W. J.; Eizirik, E.; O'Brien, S. J. (2003). "Placental mammal diversification and the Cretaceous-Tertiary boundary". Proceedings of the National Academy of Sciences. 100 (3): 1056–1061. Bibcode:2003PNAS..100.1056S. doi:10.1073/pnas.0334222100. PMC 298725. PMID 12552136. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC298725
Rose KD, Emry RJ, Gaudin TJ, Storch G (2005). "Xenarthra and Pholidota.". In Rose KD, Archibald JD (eds.). The Rise of Placental Mammals: Origins and Relationships of the Major Extant Clades. Baltimore, MD: Johns Hopkins University Press.
Zack S.P.; Penkrot T.A.; Bloch J.I.; Rose K.D. (2005). "Affinities of 'hyopsodontids' to elephant shrews and a Holarctic origin of Afrotheria" (PDF). Nature. 434 (7032): 497–501. Bibcode:2005Natur.434..497Z. doi:10.1038/nature03351. PMID 15791254. S2CID 4428738. http://doc.rero.ch/record/14365/files/PAL_E1599.pdf
Gheerbrant, Emmanuel; Filippo, Andrea; Schmitt, Arnaud (2016). "Convergence of Afrotherian and Laurasiatherian Ungulate-Like Mammals: First Morphological Evidence from the Paleocene of Morocco". PLOS ONE. 11 (7): e0157556. Bibcode:2016PLoSO..1157556G. doi:10.1371/journal.pone.0157556. PMC 4934866. PMID 27384169. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934866
Prasad, A. B.; Allard, M. W.; Green, E. D. (2008). "Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Data Sets". Molecular Biology and Evolution. 25 (9): 1795–1808. doi:10.1093/molbev/msn104. PMC 2515873. PMID 18453548. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2515873
Avilla, Leonardo S.; Mothé, Dimila (2021). "Out of Africa: A New Afrotheria Lineage Rises From Extinct South American Mammals". Frontiers in Ecology and Evolution. 9. doi:10.3389/fevo.2021.654302. ISSN 2296-701X. https://doi.org/10.3389%2Ffevo.2021.654302
Svartman, M.; Stanyon, R. (2012). "The Chromosomes of Afrotheria and Their Bearing on Mammalian Genome Evolution". Cytogenetic and Genome Research. 137 (2–4): 144–153. doi:10.1159/000341387. PMID 22868637. S2CID 24353318. https://www.researchgate.net/publication/230623010
Simpson, G. G. (1945). "The principles of classification and a classification of mammals". Bulletin of the American Museum of Natural History. 85: 1–350.
Tabuce, Rodolphe; Asher, Robert J.; Lehmann, Thomas (2008). "Afrotherian mammals: a review of current data" (PDF). Mammalia. 72 (1): 2–14. doi:10.1515/MAMM.2008.004. S2CID 46133294. Archived from the original on 2021-08-01. Retrieved 2023-04-30. https://web.archive.org/web/20210801180753/http://phylodiversity.net/azanne/csfar/images/d/d9/Afrotherian_mammals.pdf
Tabuce, Rodolphe; Asher, Robert J.; Lehmann, Thomas (2008). "Afrotherian mammals: a review of current data" (PDF). Mammalia. 72 (1): 2–14. doi:10.1515/MAMM.2008.004. S2CID 46133294. Archived from the original on 2021-08-01. Retrieved 2023-04-30. https://web.archive.org/web/20210801180753/http://phylodiversity.net/azanne/csfar/images/d/d9/Afrotherian_mammals.pdf
"What is Afrotheria?". IUCN Afrotheria Specialist Group. Retrieved 10 December 2013. http://www.afrotheria.net/information.php
Cooper, L. N.; Seiffert, E. R.; Clementz, M.; Madar, S. I.; Bajpai, S.; Hussain, S. T.; Thewissen, J. G. M. (2014-10-08). "Anthracobunids from the Middle Eocene of India and Pakistan Are Stem Perissodactyls". PLOS ONE. 9 (10): e109232. Bibcode:2014PLoSO...9j9232C. doi:10.1371/journal.pone.0109232. PMC 4189980. PMID 25295875. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189980
Gheerbrant, Emmanuel; Filippo, Andrea; Schmitt, Arnaud (2016). "Convergence of Afrotherian and Laurasiatherian Ungulate-Like Mammals: First Morphological Evidence from the Paleocene of Morocco". PLOS ONE. 11 (7): e0157556. Bibcode:2016PLoSO..1157556G. doi:10.1371/journal.pone.0157556. PMC 4934866. PMID 27384169. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934866
Erdal, O.; Antoine, P.-O.; Sen, S.; Smith, A. (2016). "New material of Palaeoamasia kansui (Embrithopoda, Mammalia) from the Eocene of Turkey and a phylogenetic analysis of Embrithopoda at the species level". Palaeontology. 59 (5): 631–655. Bibcode:2016Palgy..59..631E. doi:10.1111/pala.12247. S2CID 89418652. https://hal.sorbonne-universite.fr/hal-01346066/document
"Afrosoricida". Mammal Species of the World, 3rd edition. Retrieved 17 March 2014. http://www.afrotheria.net/information.php
McDowell, S. B. (1958). "The Greater Antillean insectivores". Bulletin of the American Museum of Natural History. 115: 115–213.
Tabuce, R.; Marivaux, L.; Adaci, M.; Bensalah, M.; Hartenberger, J.-L.; Mahboubi, M.; Mebrouk, F.; Tafforeau, P.; Jaeger, J.-J. (2007). "Early Tertiary mammals from North Africa reinforce the molecular Afrotheria clade". Proceedings of the Royal Society B: Biological Sciences. 274 (1614): 1159–1166. doi:10.1098/rspb.2006.0229. PMC 2189562. PMID 17329227. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2189562
A Anthony Ravel; Maeva Orliac (2014). "The inner ear morphology of the 'condylarthran' Hyopsodus lepidus". Historical Biology. 27 (8): 957–969. doi:10.1080/08912963.2014.915823. S2CID 84391276. /wiki/Doi_(identifier)
Seiffert, Erik R (2007). "A new estimate of afrotherian phylogeny based on simultaneous analysis of genomic, morphological, and fossil evidence". BMC Evolutionary Biology. 7 (1): 224. Bibcode:2007BMCEE...7..224S. doi:10.1186/1471-2148-7-224. PMC 2248600. PMID 17999766. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2248600
Gheerbrant, Emmanuel; Amaghzaz, Mbarek; Bouya, Baadi; Goussard, Florent; Letenneur, Charlène (2014). "Ocepeia (Middle Paleocene of Morocco): The Oldest Skull of an Afrotherian Mammal". PLOS ONE. 9 (2): e89739. Bibcode:2014PLoSO...989739G. doi:10.1371/journal.pone.0089739. PMC 3935939. PMID 24587000. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935939
Avilla, Leonardo S.; Mothé, Dimila (2021). "Out of Africa: A New Afrotheria Lineage Rises from Extinct South American Mammals". Frontiers in Ecology and Evolution. 9. doi:10.3389/fevo.2021.654302. https://doi.org/10.3389%2Ffevo.2021.654302
Avilla, Leonardo S.; Mothé, Dimila (2021). "Out of Africa: A New Afrotheria Lineage Rises from Extinct South American Mammals". Frontiers in Ecology and Evolution. 9. doi:10.3389/fevo.2021.654302. https://doi.org/10.3389%2Ffevo.2021.654302
Cooper, L. N.; Seiffert, E. R.; Clementz, M.; Madar, S. I.; Bajpai, S.; Hussain, S. T.; Thewissen, J. G. M. (2014-10-08). "Anthracobunids from the Middle Eocene of India and Pakistan Are Stem Perissodactyls". PLOS ONE. 9 (10): e109232. Bibcode:2014PLoSO...9j9232C. doi:10.1371/journal.pone.0109232. PMC 4189980. PMID 25295875. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189980