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Viability assay
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<h2 id="common-methods">Common methods</h2> <p>Though simple visual techniques of observing viability can be useful, it can be difficult to thoroughly measure an organism's/part of an organism's viability merely using the observation of physical properties. However, there are a variety of common protocols utilized for further observation of viability using assays. </p> <ul><li>Tetrazolium reduction: One useful way to locate and measure viability is to complete a Tetrazolium Reduction Assay. The tetrazolium aspect of this assay, which utilizes both positive and negative charges in its formula, promotes the distinction of cell viability in a specimen.<a class="footnote-ref" id="fnref:5" href="#fn:5"><sup>5</sup></a></li></ul> <ul><li>Resazurin reduction: Resazurin Reduction Assays perform very closely to that of a tetrazolium assay, except they use the power of redox to fuel their ability to represent cell viability.<a class="footnote-ref" id="fnref:6" href="#fn:6"><sup>6</sup></a></li></ul> <ul><li>Protease viability marker: One can look at protease function in specimens if they wish to target viability in cells; this practice in research is known as "Protease Viability Marker Assay Concept". The actions of protease cease once a cell dies, so a clear-cut line is drawn in determining cell viability when using this technique.<a class="footnote-ref" id="fnref:7" href="#fn:7"><sup>7</sup></a></li></ul> <ul><li>ATP:ATP is a common energy molecule that many researchers hold extensive knowledge of, thus carrying over to how one understands viability assays. The ATP Assay Concept is a well-known technique for determining the viability of cells using the assessment of ATP and a method known as "firefly luciferase".<a class="footnote-ref" id="fnref:8" href="#fn:8"><sup>8</sup></a></li></ul> <ul><li>Sodium-potassium ratio: Another kind of assay practices the examination of the ratio of <a href="/facts/Potassium/FWPwS7Rj">potassium</a> to <a href="/facts/Sodium/eYuSPu2V">sodium</a> in cells to serve as an index of viability. If the cells do not have high intracellular potassium and if intracellular sodium is low, then (1) the <a href="/facts/Cell_membrane/vAXSD0DT">cell membrane</a> may not be intact, and/or (2) the <a href="/facts/Na%252B%2fK%252B-ATPase/SuA4d4Na">sodium-potassium pump</a> may not be operating well.<a class="footnote-ref" id="fnref:9" href="#fn:9"><sup>9</sup></a><a class="footnote-ref" id="fnref:10" href="#fn:10"><sup>10</sup></a> </li></ul> <ul><li>Cytolysis or membrane leakage: This category includes the <a href="/facts/Lactate_dehydrogenase/FGuLGcXe">lactate dehydrogenase</a> assay. Assays such as these contain a stable enzyme common in all cells that can be readily detected when cell membranes are no longer intact. Examples of this type of assay include <a href="/facts/Propidium_iodide/le4CjnoC">propidium iodide</a>, <a href="/facts/Trypan_blue/QJayYrVG">trypan blue</a>, and <a href="/facts/7-Aminoactinomycin_D/U6yybFtg">7-Aminoactinomycin D</a> (7-AAD).</li></ul> <ul><li>Mitochondrial activity or caspase: <a href="/facts/Resazurin/5d4uP6nx">Resazurin</a> and <a href="/facts/Formazan/aCU7Fqvy">Formazan</a> (<a href="/facts/MTT_assay/4RQ5gsu7">MTT</a>/XTT) can assay for various stages in the <a href="/facts/Apoptosis/8dVzSm4y">apoptosis</a> process that foreshadows cell death.</li></ul> <ul><li>Functional: Assays of cell function will be highly specific to the types of cells being assayed. For example, <a href="/facts/Motility/Df5BECHL">motility</a> is a widely used assay of sperm cell function. <a href="/facts/Gamete/j8e8fls6">Gamete</a> survival can generally be used to assay <a href="/facts/Fertility/5S7Xull5">fertility</a>. <a href="/facts/Red_blood_cell/Kggpq8Jh">Red blood cells</a> have been assayed in terms of <a href="/facts/Erythrocyte_deformability/nffVDPfN">deformability</a>, <a href="/facts/Osmotic_fragility/GaBDunQM">osmotic fragility</a>, <a href="/facts/Hemolysis/1WpVYHkP">hemolysis</a>, <a href="/facts/Adenosine_triphosphate/nB9bwgcU">ATP</a> level, and <a href="/facts/Hemoglobin/RsD1MzYA">hemoglobin</a> content.<a class="footnote-ref" id="fnref:11" href="#fn:11"><sup>11</sup></a> For <a href="/facts/Transplantable_organs_and_tissues/B4VP7rMM">transplantable whole organs</a>, the ultimate assay is the ability to sustain life after transplantation, an assay which is not helpful in preventing transplantation of non-functional organs.<a class="footnote-ref" id="fnref:12" href="#fn:12"><sup>12</sup></a></li></ul> <ul><li>Genomic and proteomic: Cells can be assayed for activation of stress pathways using <a href="/facts/DNA_microarray/hofkMvou">DNA microarrays</a> and protein chips.</li></ul> <ul><li>Flow Cytometry: Automation allows for analysis of thousands of cells per second.<a class="footnote-ref" id="fnref:13" href="#fn:13"><sup>13</sup></a></li></ul> <p>As with many kinds of viability assays, quantitative measures of physiological function do not indicate whether damage repair and recovery is possible.<a class="footnote-ref" id="fnref:14" href="#fn:14"><sup>14</sup></a> An assay of the ability of a <a href="/facts/Cell_culture/7Qhu13D9">cell line</a> to adhere and divide may be more indicative of incipient damage than membrane integrity.<a class="footnote-ref" id="fnref:15" href="#fn:15"><sup>15</sup></a> </p> <h3>Frogging and tadpoling</h3> <p>"Frogging" is a type of viability assay method that utilizes an agar plate for its environment and consists of plating serial dilutions by pinning them after they have been diluted in liquid. Some of its limitations include that it does not account for total viability and it is not particularly sensitive to low-viability assays; however, it is known for its quick pace.<a class="footnote-ref" id="fnref:16" href="#fn:16"><sup>16</sup></a> "Tadpoling", which is a method practiced after the development of "frogging", is similar to the "frogging" method, but its test cells are diluted in liquid and then kept in liquid through the examination process. The "tadpoling" method can be used to measure culture viability accurately, which is what depicts its main separation from "frogging".<a class="footnote-ref" id="fnref:17" href="#fn:17"><sup>17</sup></a> </p> <h2 id="list-of-viability-assay-methods">List of viability assay methods</h2> <ul><li><a href="/facts/Calcein/yjjjdQET">Calcein AM</a></li> <li><a href="/facts/Clonogenic_assay/P78c7a4A">Clonogenic assay</a></li> <li><a href="/facts/Ethidium_homodimer_assay/u4ACNhUb">Ethidium homodimer assay</a></li> <li><a href="/facts/Evans_blue_(dye)/Gej8uBWr">Evans blue</a></li> <li><a href="/facts/Fluorescein_diacetate_hydrolysis/TjVLNLc3">Fluorescein diacetate hydrolysis</a>/<a href="/facts/Propidium_iodide/le4CjnoC">Propidium iodide</a> staining (FDA/PI staining)</li> <li><a href="/facts/Flow_cytometry/M2IvPdL8">Flow cytometry</a></li> <li><a href="/facts/Formazan/aCU7Fqvy">Formazan</a>-based assays (<a href="/facts/MTT_assay/4RQ5gsu7">MTT</a>/XTT)</li> <li><a href="/facts/Green_fluorescent_protein/6nWDMhSC">Green fluorescent protein</a></li> <li><a href="/facts/Lactate_dehydrogenase/FGuLGcXe">Lactate dehydrogenase</a> (LDH)</li> <li><a href="/facts/Methyl_violet/wcGSFcL6">Methyl violet</a></li> <li><a href="/facts/Neutral_red/dlPzgkU2">Neutral red</a> uptake (<a href="/facts/Vital_stain/smUpeABc">vital stain</a>)</li> <li><a href="/facts/Propidium_iodide/le4CjnoC">Propidium iodide</a>, DNA stain that can differentiate <a href="/facts/Necrosis/zCPsTeWx">necrotic</a>, <a href="/facts/Apoptosis/8dVzSm4y">apoptotic</a> and normal <a href="/facts/Cell_(biology)/bLM9UQvy">cells</a>.</li> <li><a href="/facts/Resazurin/5d4uP6nx">Resazurin</a></li> <li><a href="/facts/TUNEL_assay/f4K6F2Aw">TUNEL assay</a></li></ul> <h2 id="see-also">See also</h2> <ul><li><a href="/facts/Cytotoxicity/SQuTTLoL">Cytotoxicity</a></li> <li><a href="/facts/Vital_stain/smUpeABc">Vital stain</a></li></ul> <h2 id="further-reading">Further reading</h2> <ul><li>Stoddart MJ (2011). <i>Mammalian Cell Viability: Methods and Protocols</i>. Methods in Molecular Biology. Vol. 740. New York, NY: Springer. <a href="/facts/Doi_(identifier)/muM9Etpq">doi</a>:<a href="https://doi.org/10.1007%2F978-1-61779-108-6">10.1007/978-1-61779-108-6</a>. <a href="/facts/ISBN_(identifier)/15AdSPa9">ISBN</a> 978-1-61779-107-9. <a href="/facts/S2CID_(identifier)/ldJsHa2Y">S2CID</a> <a href="https://api.semanticscholar.org/CorpusID:3704247">3704247</a>.</li> <li>Riss TL, Moravec RA, Niles AL, Duellman S, Benink HA, Worzella TJ, et al. (2004). <a href="https://www.ncbi.nlm.nih.gov/books/NBK144065/">"Cell Viability Assays"</a>. In Sittampalam GS, Grossman A, Brimacombe K, et al. (eds.). <i>Assay Guidance Manual</i>. Bethesda (MD): Eli Lilly & Company and the National Center for Advancing Translational Sciences. <a href="/facts/PMID_(identifier)/JlHAvMHt">PMID</a> <a href="https://pubmed.ncbi.nlm.nih.gov/23805433">23805433</a>.</li></ul> <h2 id="references">References</h2> <ol> <li id="fn:1"><p>Gavanji S, Bakhtari A, Famurewa AC, Othman EM (January 2023). "Cytotoxic Activity of Herbal Medicines as Assessed in Vitro: A Review". Chemistry & Biodiversity. 20 (2): 3–27. doi:10.1002/cbdv.202201098. PMID 36595710. S2CID 255473013. <a href="https://doi.org/10.1002%2Fcbdv.202201098" target="_blank">https://doi.org/10.1002%2Fcbdv.202201098</a> <a href="#fnref:1" class="footnote-back-ref">↩</a></p></li> <li id="fn:2"><p>Pegg DE (1989-06-01). "Viability assays for preserved cells, tissues, and organs". Cryobiology. 26 (3): 212–231. doi:10.1016/0011-2240(89)90016-3. ISSN 0011-2240. PMID 2743785. <a href="/wiki/Doi_(identifier)" target="_blank">/wiki/Doi_(identifier)</a> <a href="#fnref:2" class="footnote-back-ref">↩</a></p></li> <li id="fn:3"><p>Pegg DE (1989-06-01). "Viability assays for preserved cells, tissues, and organs". Cryobiology. 26 (3): 212–231. doi:10.1016/0011-2240(89)90016-3. ISSN 0011-2240. PMID 2743785. <a href="/wiki/Doi_(identifier)" target="_blank">/wiki/Doi_(identifier)</a> <a href="#fnref:3" class="footnote-back-ref">↩</a></p></li> <li id="fn:4"><p>"Overview of Probes for Cell Viability, Cell Proliferation and Live-Cell Function—Section 15.1 - US". www.thermofisher.com. 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