ModBase - Reference.org

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Description Database of comparative protein structure models

Research center University of California at San Francisco

Laboratory Department of Bioengineering and Therapeutic Sciences

Authors Ursula Pieper, Eswar Narayanan, Ben Webb, Andrej Sali

Primary citation Pieper & al. (2011)

Release date 1998

Additional information

ModBase

Database of comparative protein structure models, calculated by the modeling pipeline ModPipe

ModBase is a database of annotated comparative protein structure models, containing models for more than 3.8 million unique protein sequences. Models are created by the comparative modeling pipeline ModPipe which relies on the MODELLER program.

ModBase is developed in the laboratory of Andrej Sali at UCSF. ModBase models are also accessible through the Protein Model Portal.

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External links

http://salilab.org/modbase

References

Pieper, Ursula; Webb Benjamin M; Barkan David T; Schneidman-Duhovny Dina; Schlessinger Avner; Braberg Hannes; Yang Zheng; Meng Elaine C; Pettersen Eric F; Huang Conrad C; Datta Ruchira S; Sampathkumar Parthasarathy; Madhusudhan Mallur S; Sjölander Kimmen; Ferrin Thomas E; Burley Stephen K; Sali Andrej (Jan 2011). "ModBase, a database of annotated comparative protein structure models, and associated resources". Nucleic Acids Res. 39 (Database issue). England: D465-74. doi:10.1093/nar/gkq1091. PMC 3013688. PMID 21097780. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013688 ↩

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