Azhar's leadership is said to be nominal. The group has a largely decentralised structure. JeM's membership, drawn from the former members of Harkat-ul-Mujahideen, was allied to the Taliban in Afghanistan and Al Qaeda. The members had shared the Al Qaeda training camps in Afghanistan and carried loyalty to Al Qaeda. A majority of the members of Harkat are said to have followed Azhar into the newly founded group, leaving Harkat under-funded and under-supported.
On 20 April 2000, JeM carried out the first suicide bombing in Kashmir, exploding a bomb in an Indian army barracks. Five Indian soldiers were killed.
Earlier in 2001, when the group anticipated that the US State Department would declare it a foreign Islamic jihadist organisation, it renamed itself Tehrik-ul-Furqan and transferred its assets to low-profile supporters. JeM was declared a foreign Islamic jihadist organisation by the United Nations in October 2001 and by the US in December 2001.
In response to the January 2002 ban by Pakistan, JeM changed its name to Khuddam ul-Islam. Khuddam was also banned in 2003, after which it re-branded itself as a charity called Al-Rehmat Trust through which they are accused of raising funds for their activities.
By this time, the JeM had split into two groups, due to conflicts among the members. Three JeM commanders, Abdul Jabbar, Maulana Umar Farooq and Abdullah Shah Mazhar, left the group and formed Jamaat ul-Furqan. The remaining group that stayed with Masood Azhar used the name Khuddam ul-Islam.
The rank and file of the JeM were angered by Musharraf's U-turn in joining the War on Terror. By staying loyal to the Pakistani state, Masood Azhar lost majority support in the JeM Supreme Council, who demanded his resignation. Particularly influential among the rebels was Maulana Abdul Jabbar, whose faction led a jihad against what they called the "slave" government of Pakistan and the US influence upon it. They were supported by Al Qaeda, and joined by members of Lashkar-e-Taiba, Lashkar-e-Jhangvi and Harkatul Mujahideen.
From March to September 2002, the rebels carried out suicide missions on Pakistani officials in cities like Islamabad, Karachi, Murree, Taxila and Bahawalpur. After the fall of the Taliban government, the JeM activists returning from Afghanistan attacked Christian churches, Shia mosques and diplomatic missions inside Pakistan. The ISI demanded Masood Azhar to rein in the rank-and-file. However he had lost control over them. He maintained that they were already expelled from the organisation and the state should arrest them. In fact, most of the factions remained within the JeM and competed with the parent organisation for authority and resources. Some rebellious factions gathered around Abdul Jabbar who launched Jamaat-ul-Furqan in late 2002. The rebel factions were supported by "rogue" members of the ISI.
Eventually, the government cracked down on the rogue elements in the military and intelligence establishments. More than a hundred members were apprehended and dismissed, with some members being sentenced to death. However, the majority of the militant infrastructure was left intact. Azhar's group, which had fallen into relative obscurity by 2004, was allowed to rebuild itself after the problematic portions of the leadership were purged. The rebellious factions eventually realigned themselves with Tehrik-i-Taliban Pakistan (Pakistani Taliban) in 2007.
Masood Azhar stayed loyal to the Pakistani state after 2004. Pakistan in turn protected his group despite the official bans. The group continued to grow in Bahawalpur. In 2009, it was reported to have built a large 6.5 acre walled complex in Bahawalpur, along with a swimming pool and a stable for a dozen horses, which could be used for training militants. India Today later revealed that the complex has been branded as 'Jamia Masjid Subhan Allah' and that it was 8 km. away from the headquarters of Pakistan Army's 31 Corps. In the centre of the city, the group runs an "imposing" madrassa, attended by hundreds of children every year. In 2008, the organisation held a massive three-day rally in the city, with its own armed security guards posted at all the entrances to the city centre. The police were conspicuous by their absence.
Masood Azhar kept a low profile for several years until he resurfaced in 2014, giving fiery speeches calling for more attacks on India and the United States. He boasted of having 300 suicide attackers at his command and threatened to kill Narendra Modi if he were to become the Prime Minister.
A week after Narendra Modi's visit, in January 2016, the group launched an attack on the Pathankot air base in which seven security personnel were killed. This was immediately followed by an attack on the Indian consulate in Mazar-i-Sharif in Afghanistan.
Both India and Pakistan condemned the attack and stayed on course with their peace process. Pakistan has also followed on the leads provided by India and carried out raids on the offices of JeM. It announced the formation of a joint investigation team with India to investigate the attack. It was also announced that Masood Azhar was taken into "protective custody". However, JeM issued a statement denying that anybody had been arrested.
In April 2016, the JeM chief Masood Azhar was said to be free but "within reach, if needed". According to Riaz Hussain Pirzada, the Member of National Assembly from Bahawalpur, the "breeding grounds" still remained and the madrassas were still being financed. According to an official, Nawaz Sharif ordered the Counterterrorism Department to crack down on the organisation but, in a high-level meeting, the army chief General Raheel Sharif pressured the Prime Minister to hand over the crackdown to the Army, after which "no one knows what happened". Dawn reported the Punjab Chief Minister Shahbaz Sharif as saying that, whenever civilian authorities took action against certain groups, the security establishment worked behind the scenes to set them free. The government however denied the accuracy of the report.
India then launched a diplomatic offensive, trying to isolate Pakistan in the world community. On 28 September, it declared that it had carried out "surgical strikes" on alleged JeM camps in Pakistani-administered Kashmir. The claim was however denied by Pakistan.
On 14 February 2019, Jaish-e-Mohammed carried out and claimed responsibility for a suicide attack in Lathpora near Awantipora in Kashmir's Pulwama District on a convoy of security forces, killing least 40 Indian personnel. A bus carrying 39 Central Reserve Police Force personnel was rammed by a car carrying 350 kg of explosives.
On 27 August 2019, two members of a nomadic community were killed by terrorists believed to be members of Jaish-e-Mohammed in the higher reaches of Tral in south Kashmir after they were abducted from their temporary shelter.
After the Taliban seizure of Afghanistan, many JeM cadres were released, the JeM and Taliban have held meetings and the JeM has been assured of all support in carrying out its activities in India. The Hindustan Times reported on Oct 27, 2021 that JeM's leader Masood Azhar met w/ Taliban leaders including Mullah Baradar in Khandar in late August 2021 seeking their help in the Kashmir fight.
The declared objective of the JeM is to liberate Kashmir and merge it with Pakistan. However, it projects Kashmir as a "gateway" to the entire India, whose Muslims are also deemed to be in need of liberation. After liberating Kashmir, it aims to carry its jihad to other parts of India, with an intent to drive Hindus and other non-Muslims from the Indian subcontinent.
JeM aims to drive the United States and Western forces from Afghanistan. The JeM leader Masood Azhar is reported to have said in a speech in Karachi:
In late 2002, Christians were targeted across Pakistan and the gunmen belonging to JeM were caught for the acts. Some members have attacked members of the Pakistani state and western targets inside Pakistan. Jewish American journalist Daniel Pearl was abducted and murdered by Ahmed Omar Sheikh.
The launch of JeM in Karachi in 2000 was attended by 10,000 armed followers. The majority of the early membership was drawn from Harkat-ul-Mujahideen. Having fought in Afghanistan alongside the Taliban and Al Qaeda, these members carried loyalty to those organisations and enmity towards the United States.
Approximately three-quarters of JeM's membership is drawn from Punjab in Pakistan, from Multan, Bahawalpur and Rahim Yar Khan districts. This region being the main ethnic origin of the Pakistani military corps, ISI believed that the shared ethnicity would make the JeM aligned to the military's strategic goals. There are also a large number of Afghans and Arabs. Several western militants of Pakistani origin have also joined the organisation. Prominent among them are Rashid Rauf, who was involved with a 2006 plot to blow up transatlantic airliners, Shehzad Tanweer, who was involved with the 2005 London Underground bombings, and Ahmed Omar Sheikh, convicted of murdering Daniel Pearl.
Following the split in 2002, the majority of the original fighters left the parent organisation and joined renegade groups. When the organisation was revived by 2009, JeM was believed to have between one and two thousand fighters and several thousand supporting personnel. Masood Azhar claimed to have 300 suicide attackers at his command.
JeM originally operated training camps in Afghanistan, jointly with the other militant groups. After the fall of the Taliban government, it relocated them to Balakot and Peshawar in Khyber-Pakhtunkhwa and Muzaffarabad in Pakistan-administered Kashmir. By 2009, it developed a new headquarters in Bahawalpur in Pakistani Punjab, 420 miles south of Islamabad. These include a madrassa in the centre of the city and a 6.5 acre walled complex that serves as a training facility, including water training and horse back riding. Bahawalpur also serves as a rest and recuperation facility for jihadists fighting in Afghanistan, away from the areas of US drone attacks. It is also close to the bases of other militant groups with which JeM is believed to have operational ties: Lashkar-e-Taiba in Muridke, Sipah-e-Sahaba in Gojra, and Lashkar-e-Jhangvi also based in Punjab. There are at least 500–1000 other madrassas in Bahawalpur, most of which teach a violent version of Islam to children.
Like other jihadi outfits in the country, JeM distills its ideology through the print media, its publications including the weekly Al-Qalam in Urdu and English, monthly Ayeshatul Binat in Urdu for women and weekly Musalman Bachy for children. Other E-publications are made on telegram channels usually stating their successes in their operations against the Indian Army and publishing statements of the leadership of the organization
When JeM started, it had strong ties to the Taliban and Al-Qaeda, sharing their training camps in Afghanistan, and exchanging intelligence, training and coordination. Bruce Riedel suggests that the 2001 Indian Parliament attack was possibly a "payback" to Al-Qaeda for its earlier help in getting Masood Azhar released. With the Indian reaction to the attack, Pakistan was forced to move its forces from the Afghan border to the Indian border, relieving pressure on Al-Qaeda.
Most of the JeM members with loyalties to the Taliban left to join renegade groups in 2002. However, Masood Azhar's group was noticed recruiting fighters for the Afghan jihad in 2008. In 2010, Pakistan's Interior minister Rehman Malik stated that the JeM, along with Lashkar-e-Jhangvi and Sipah-e-Sahaba Pakistan, were allied to the Taliban and Al-Qaeda. Within South Punjab, the JeM is closely allied to Lashkar-e-Jhangvi and Sipah-e-Sahaba. Scholars Abou Zahab and Roy state that the three organisations appear to be "the same party" focusing on different sectors of activity.
JeM continues to have links to its ancestor, Harkat-ul-Mujahideen. In addition, the group has operational ties to Lashkar-e-Taiba, which it employed in launching the 2001 Indian Parliament attack. It joined the ISI-sponsored United Jihad Council, an umbrella organisation of 13–16 militant organisations that fight in Indian-administered Kashmir.
Khuddam ul-Islam is a militant splinter group of the Jaish-e-Mohammed. It is a Proscribed Organisation in the United Kingdom under the Terrorism Act 2000 and said to be politically aligned with Maulana Fazal-ur-Rehman's faction of Jamiat Ulema-e-Islam. Some sources believe that Khuddam ul-Islam is simply a restructuring of JeM and that the group is under the command of Mufti Abdul Rauf Asghar, the younger brother of JeM's founder, Maulana Masood Azhar.
Before being designated as a terrorist organization, Jaish-e-Mohammed established the Al-Akhtar Trust (Arabic: ثقة الأختر, romanized: Thiqat alʼkhtr) in Pakistan. The group mostly funded Al-Qaeda and the Taliban and its associates with food, water, and clothing for orphans of "martyrs". The organization also funded terrorism in Iraq before being designated as a terrorist organization funder by the United States on October 14, 2003.
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Cronin et al., Foreign Terrorist Organizations (FTOs) (2004), p. 40: "The JEM is a Pakistan-based, militant Islamic group founded by Maulana Masood Azhar in March 2000." - Cronin, Audrey Kurth; Aden, Huda; Frost, Adam; Jones, Benjamin (6 February 2004), "Foreign Terrorist Organizations" (PDF), CRS Report for Congress, Washington, D.C.: Congressional Research Service: 40–43, retrieved 2 December 2012 https://fas.org/irp/crs/RL32223.pdf
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Riedel, Deadly Embrace (2012): "The answer is JeM's friend and ally, Osama bin Laden's al Qaeda." (p. 69) "Or as Pakistan's interior minister Rehman Malik has put it, "They—Lashkar-e-Janghvi, the Sipah-e-Sohaba Pakistan, and Jaish-e-Mohammad—are allies of the Taliban and al Qaeda" and do indeed pursue many of the same goals." (p. 100) - Riedel, Bruce O. (2012), Deadly Embrace: Pakistan, America, and the Future of the Global Jihad, Brookings Institution Press, ISBN 978-0-8157-2274-8 https://books.google.com/books?id=ULgk7_oWB1EC
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