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Small nucleolar RNA-derived microRNA

In molecular biology, small nucleolar RNA derived microRNAs are microRNAs (miRNA) derived from small nucleolar RNA (snoRNA). MicroRNAs are usually derived from precursors known as pre-miRNAs, these pre-miRNAs are recognised and cleaved from a pri-miRNA precursor by the Pasha and Drosha proteins. However some microRNAs, mirtrons, are known to be derived from introns via a different pathway which bypasses Pasha and Drosha. Some microRNAs are also known to be derived from small nucleolar RNA.

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Discovery

Small nucleolar RNA derived microRNA was first described in 2008. The protozoal intestinal parasite Giardia lamblia lacks the Drosha protein involved in pre-miRNA cleavage from pri-miRNA. However the miRNA processing protein dicer is found in Giardia.1 A 26 nucleotide RNA, miR2, is processed from the Giardia lamblia snoRNA GlsR17 by dicer. MiR2 is a microRNA which may regulate the expression of variant surface proteins.2

Also in 2008, a small RNA was found to be cleaved from SCARNA15, a Human small Cajal body-specific RNA, by Dicer. This small RNA was found to function as a microRNA. Potential microRNAs were also identified in several other Human snoRNAs.3

Giardia snoRNA-derived miRNAs

Giardia lamblia produces at least 20 snoRNAs.4 SnoRNAs guide the modification of rRNA, and contain a region of 10–21 nucleotides which is complementary to the target RNA.5 Five of the Giardia lamblia snoRNAs have no complementarities to rRNA, implying that they may have a different function.6 MicroRNAs are derived from five of the box C/D snoRNAs from Giardia lamblia:

  • The microRNA miR2 is derived from the snoRNA GlsR17 and may regulate the expression of variant surface proteins7
  • The microRNA miR3 is derived from the snoRNA GlsR168
  • The microRNA miR5 is derived from the snoRNA GlsR2. MiR5 may regulate the expression of several different genes, including four kinases and three variant surface proteins. The variant surface proteins are different from those potentially regulated by miR29
  • The microRNA miR6 is derived from the snoRNA GlsR1. The predicted target sites for this miRNA include variant surface proteins10
  • The microRNA miR10 is derived from the snoRNA GlsR8. The predicted target sites for this miRNA include variant surface proteins11

See also

References

  1. Macrae IJ, Zhou K, Li F, Repic A, Brooks AN, Cande WZ, et al. (2006). "Structural basis for double-stranded RNA processing by Dicer". Science. 311 (5758): 195–198. Bibcode:2006Sci...311..195M. doi:10.1126/science.1121638. PMID 16410517. S2CID 23785494. https://pubmed.ncbi.nlm.nih.gov/16410517 ↩

  2. Saraiya AA, Wang CC (2008). "snoRNA, a novel precursor of microRNA in Giardia lamblia". PLOS Pathog. 4 (11): e1000224. doi:10.1371/journal.ppat.1000224. PMC 2583053. PMID 19043559. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2583053 ↩

  3. Ender C, Krek A, Friedländer MR, Beitzinger M, Weinmann L, Chen W, et al. (2008). "A human snoRNA with microRNA-like functions". Mol Cell. 32 (4): 519–528. doi:10.1016/j.molcel.2008.10.017. PMID 19026782. https://doi.org/10.1016%2Fj.molcel.2008.10.017 ↩

  4. Yang CY, Zhou H, Luo J, Qu LH (2005). "Identification of 20 snoRNA-like RNAs from the primitive eukaryote, Giardia lamblia". Biochem Biophys Res Commun. 328 (4): 1224–1231. doi:10.1016/j.bbrc.2005.01.077. PMID 15708007. https://pubmed.ncbi.nlm.nih.gov/15708007 ↩

  5. Kiss-László Z, Henry Y, Kiss T (1998). "Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA". EMBO J. 17 (3): 797–807. doi:10.1093/emboj/17.3.797. PMC 1170428. PMID 9451004. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1170428 ↩

  6. Yang CY, Zhou H, Luo J, Qu LH (2005). "Identification of 20 snoRNA-like RNAs from the primitive eukaryote, Giardia lamblia". Biochem Biophys Res Commun. 328 (4): 1224–1231. doi:10.1016/j.bbrc.2005.01.077. PMID 15708007. https://pubmed.ncbi.nlm.nih.gov/15708007 ↩

  7. Saraiya AA, Wang CC (2008). "snoRNA, a novel precursor of microRNA in Giardia lamblia". PLOS Pathog. 4 (11): e1000224. doi:10.1371/journal.ppat.1000224. PMC 2583053. PMID 19043559. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2583053 ↩

  8. Saraiya AA, Wang CC (2008). "snoRNA, a novel precursor of microRNA in Giardia lamblia". PLOS Pathog. 4 (11): e1000224. doi:10.1371/journal.ppat.1000224. PMC 2583053. PMID 19043559. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2583053 ↩

  9. Li W, Saraiya AA, Wang CC (2011). "Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA". PLOS Negl Trop Dis. 5 (10): e1338. doi:10.1371/journal.pntd.0001338. PMC 3196473. PMID 22028939. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3196473 ↩

  10. Li W, Saraiya AA, Wang CC (2012). "The profile of snoRNA-derived microRNAs that regulate expression of variant surface proteins in Giardia lamblia". Cell Microbiol. 14 (9): 1455–1473. doi:10.1111/j.1462-5822.2012.01811.x. PMC 3422372. PMID 22568619. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422372 ↩

  11. Li W, Saraiya AA, Wang CC (2012). "The profile of snoRNA-derived microRNAs that regulate expression of variant surface proteins in Giardia lamblia". Cell Microbiol. 14 (9): 1455–1473. doi:10.1111/j.1462-5822.2012.01811.x. PMC 3422372. PMID 22568619. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422372 ↩